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DNA/RNA sequences, gene expression, protein structures, metagenomics, single-cell sequencing
22,530 datasets
Reciprocal BLASTp searches with an E-value threshold of 1e-5 were used to assign gene descriptions from Tetranychus urticae to Tetranychus evansi gene IDs. The dataset, authored by Dries Amezian and last updated in May 2026, includes annotation files, a genome assembly, and reciprocal hit results totaling 101.6 MB. Gene IDs without a reciprocal best hit were annotated as hypothetical proteins.
Laura Pissani's study investigates the use of large language models to generate psycholinguistic norms for 300 English two-word metaphor combinations. The dataset, last updated in June 2026, contains model-generated ratings for familiarity, aptness, concreteness, metaphoricity, and constituency. It compares norms generated by eight LLMs under different presentation and response formats against human ratings.
62 non-duplicate Carbapenem-Resistant Enterobacterales (CRE) isolates from sterile body fluids were analyzed over a ten-year period. The dataset, created by Shenyun Cao and shared on figshare, includes whole-genome sequencing results for resistance genes, virulence factors, and sequence types, paired with clinical outcome data. Klebsiella pneumoniae ST11 carrying the blaKPC-2 gene was the dominant clone, and ICU admission was significantly associated with patient mortality.
Shenyun Cao's dataset comprises 62 non-duplicate Carbapenem-Resistant Enterobacterales (CRE) isolates from sterile body fluids at a tertiary hospital between 2016 and 2025. The data includes whole-genome sequencing results for molecular epidemiology, resistance and virulence gene profiles, sequence types, and associated clinical risk factors. It was last updated on June 2, 2026, and is shared under a CC-BY-4.0 license.
250 randomized models of noisy gene expression simulate mRNA bursting and protein production dynamics. Author Gavin Conant created 20 hybrid models from 100 low-variance parent models to study heterosis. The models are stored as XML files and were last updated in May 2026.
Joyce Lübbers established a novel intraurethral infection model using UPEC strain UTI89 in Göttingen minipigs. The model maintained infection for 14 days and strain identity verification revealed 75% of animals retained the challenge strain. This dataset, uploaded on figshare in 2026, aims to bridge preclinical findings and clinical outcomes for vaccine and antibiotic studies.
A 2026 study by Joyce Lübbers describes a novel intraurethral urinary tract infection model in Göttingen minipigs using uropathogenic E. coli strain UTI89. The dataset includes results from bacterial enumeration, agglutination testing, and whole genome sequencing of recovered strains over a 14-day infection period. It is shared under a CC-BY-4.0 license on figshare.
A study establishing a 14-day intraurethral urinary tract infection model in Göttingen minipigs using uropathogenic E. coli strain UTI89. The dataset, authored by Joyce Lübbers and last updated in May 2026, includes results from bacterial enumeration, agglutination tests, and whole genome sequencing of recovered strains. It reports that 75% of animals were infected with the challenge strain, while 25% had a different E. coli strain.
Joyce Lübbers published a study on figshare in May 2026 detailing a novel urinary tract infection model. The research established a 14-day intraurethral infection in minipigs using UPEC strain UTI89, with 75% of animals infected by the challenge strain. Results include bacterial enumeration, agglutination tests, and whole genome sequencing data for recovered strains.
A 2026 study by Joyce Lübbers describes a novel urinary tract infection model using intraurethral challenge with UPEC strain UTI89 in Göttingen minipigs. The dataset includes results from bacterial enumeration, agglutination tests, and whole genome sequencing of recovered strains. It is a 37.5 KB document shared under a CC-BY-4.0 license.
A 2026 study by Joyce Lübbers describes a novel intraurethral infection model using uropathogenic E. coli strain UTI89 in Göttingen minipigs. The model established infection for 14 days and recovered bacteria were characterized via agglutination and whole genome sequencing. The results emphasize the need for strain identity verification in UTI model studies.
Joyce Lübbers established a novel intraurethral infection model using UPEC strain UTI89 in Göttingen minipigs, with infection sustained for 14 days. The dataset includes results from bacterial enumeration, agglutination tests, and whole genome sequencing of recovered strains. It was published on figshare under a CC-BY-4.0 license on May 18, 2026.
Joyce Lübbers published a dataset on 2026-05-18 describing the establishment of a novel intraurethral urinary tract infection model using uropathogenic E. coli strain UTI89 in Göttingen minipigs. The dataset includes results from a 14-day infection study, with bacterial enumeration, agglutination tests, and whole genome sequencing of recovered strains. The 195.8 KB document reports that 75% of animals were infected with the challenge strain, while 25% had a different E. coli strain recovered.
A dataset comparing methods for detecting pyrazinamide resistance in rifampicin-resistant tuberculosis isolates. The study evaluated broth microdilution at two critical concentrations and a fluorescence PCR melting curve assay against whole-genome sequencing. Yanfeng Zhao published the data on figshare in May 2026.
110 rifampicin-resistant tuberculosis isolates from Beijing were tested for pyrazinamide resistance using broth microdilution at two concentrations and a fluorescence PCR assay. Broth microdilution at 200 μg/mL showed 92.2% agreement with whole-genome sequencing for mutant isolates and 94.9% for wild-type. Yanfeng Zhao published this data on figshare in May 2026.
A 2026 study by Yanfeng Zhao compared broth microdilution and a molecular assay for detecting pyrazinamide resistance in rifampicin-resistant tuberculosis isolates from Beijing. The dataset likely contains results from 110 isolates, with resistance rates of 63.6% and 45.5% at two critical concentrations. Agreement statistics with whole-genome sequencing genotypes are reported, including kappa values of 0.590, 0.872, and 0.882.
45 differentially expressed proteins were identified between papillary thyroid carcinoma with Hashimoto’s thyroiditis and Hashimoto’s thyroiditis alone. This dataset contains proteomic analysis results from plasma-derived exosomes of 12 patients across four groups, published by Yawei Zhang in May 2026. It highlights SVEP1 and IGKV3-7 as promising non-invasive biomarkers for cancer progression.
Yawei Zhang's research dataset contains proteomic profiles of plasma-derived exosomes from patients with papillary thyroid carcinoma (PTC), PTC with Hashimoto’s thyroiditis (PTC-W), Hashimoto’s thyroiditis (HT), and healthy controls. The data includes results from label-free quantitative proteomics identifying 45 differentially expressed proteins, validated via parallel reaction monitoring. The dataset was last updated on 2026-05-25.
A 2026 study by Yawei Zhang identified plasma exosomal biomarkers for papillary thyroid carcinoma (PTC) in patients with Hashimoto’s thyroiditis (HT). The dataset includes proteomic analysis results from plasma samples of patients with PTC, PTC with HT, HT, and healthy controls. It contains 45 differentially expressed proteins validated via parallel reaction monitoring.
Yawei Zhang's dataset contains proteomic profiles of plasma-derived exosomes from patients with papillary thyroid carcinoma (PTC), PTC with Hashimoto’s thyroiditis (HT), HT alone, and healthy controls. The data includes 45 differentially expressed proteins identified via label-free quantitative proteomics and subsequent validation. The dataset was last updated on 2026-05-25.