Haplotype-Resolved Genome Assembly and Annotation for Dendrobium lasianthera

A chromosome-level, haplotype-resolved genome assembly for the orchid species Dendrobium lasianthera, generated using HiFi long-read sequencing and Hi-C scaffolding. The dataset includes a GFF3 annotation file detailing structural gene features such as genes, mRNA, CDS, and UTRs. It was authored by Yixuan Liu and last updated on April 8, 2026.

Use Cases

• Conduct comparative genomics studies within the Dendrobium genus based on the chromosome-level assembly.
• Perform evolutionary analysis of orchid species using the annotated gene structures.
• Support functional genomics research with the detailed mRNA, CDS, and UTR annotations.
• Investigate haplotype diversity and evolution using the phased genome assemblies (Haplotype A and B).

Strengths

• Chromosome-level assembly achieved using Hi-C scaffolding.
• Haplotype-resolved (phased) genome assembly for two haplotypes.
• Includes structural gene annotations in the GFF3 format.
• Dataset size of 1.5 GB suggests substantial genomic content.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.

Provenance

Source

figshare

Collection Method

Generated via HiFi long-read sequencing and Hi-C scaffolding.

Time Range

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Freshness

Last updated 2026-04-08 00:10:10; freshness should be verified.

Geography

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