Additional file 1: of Genome sequencing and assessment of plant growth-promoting propertie

Figure S1 shows time-course dual growth assays of S. marcescens UENF-22GI with phytopathogenic Fusarium solani and beneficial Trichoderma sp. over 288 hours. The dataset includes genomic features, phylogenetic trees, and presence/absence profiles of plant-growth promotion genes across 238 S. marcescens isolates, compiled by author Filipe Pereira Matteoli. Data is associated with an open-access research paper on the paperswithcode platform.

Use Cases

• Comparative genomic analysis based on the presence/absence profiles of plant-growth promotion genes across S. marcescens strains.
• Phylogenetic classification of bacterial isolates based on the maximum likelihood tree built from 1815 core genes.
• Assessment of bacterial antagonism against plant pathogens based on time-course dual growth assay data.
• Identification of unique genomic features for strain characterization based on the list of unique genes in the S. marcescens UENF-22GI genome.

Strengths

• Includes genomic comparison data across 238 S. marcescens isolates.
• Contains time-course phenotypic assay data spanning 288 hours.
• Provides multiple whole-genome similarity metrics such as average nucleotide identity and digital DNA:DNA hybridization.

Limitations

• Row count and file size for the underlying data tables are unknown, which may limit suitability assessment.
• Column-level documentation is absent; field semantics must be inferred after download.
• Last update date is unknown; freshness unverified.

Provenance

Source

paperswithcode

Collection Method

Genome sequencing and laboratory assays, likely from a research study.