Duck Folliculogenesis Multi-Omics Data: Chromatin States and Gene Networks

Additional file 2 from a study on duck folliculogenesis provides 12 supplementary tables in a 9.8 MB XLSX file. The data includes RNA-seq sample sequences, CUT&Tag and ATAC-seq quality summaries, differential gene expression counts, chromatin state coverage, and predicted transcription factor interactions. Zhen Li authored this dataset, which was last updated on May 1, 2026, and is shared under a CC-BY-4.0 license on figshare.

Use Cases

• Identify differentially expressed genes (DEGs) between developmental stages based on the counts and proportions listed in Tables S3 and S4.
• Analyze chromatin accessibility and histone modification (H3K27ac) overlaps with gene expression changes using the data in Table S6.
• Construct gene regulatory networks (GRNs) based on the core transcription factor interactions and STRING predictions detailed in Table S10.
• Investigate long-range enhancer-gene interactions specific to follicular development using the data in Table S12.

Strengths

• Includes 12 distinct tables covering multiple omics layers (RNA-seq, ATAC-seq, CUT&Tag).
• File size is 9.8 MB, suggesting a detailed but manageable supplementary dataset.
• License is clearly stated as CC-BY-4.0, permitting broad reuse.

Limitations

• Row counts and column-level documentation are absent; field semantics must be inferred after download.
• The dataset is a supplementary file; its standalone utility depends on the context of the primary research article.

Provenance

Source

figshare, authored by Zhen Li.

Collection Method

Likely generated as supplementary material for a genomics research study.

Freshness

Last updated 2026-05-01 04:43:41; freshness should be verified.