TUSC7 Study: Targeted Sequencing Metrics for Non-Small Cell Lung Cancer Samples

Supplementary Material 2 provides targeted-capture sequencing report summaries for a set of non-small cell lung cancer samples. The 6.6 KB CSV file, authored by Pablo Martin-Lopez and last updated in April 2026, contains metrics such as total reads, median coverage, duplicate rate, and on-target rate for each sample. The data was shared under a CC-BY-4.0 license on the figshare platform.

Use Cases

• Assess sequencing run quality based on metrics like TOTAL_READS and PCT_SELECTED_BASES.
• Evaluate target region coverage uniformity using the FOLD_80_BASE_PENALTY column.
• Filter samples for downstream analysis based on callability metrics like PCT_TARGET_BASES_20X.
• Calculate duplicate rates for quality control using the PCT_EXC_DUPE column.

Strengths

• File size is 6.6 KB, indicating a lightweight and easily shareable dataset.
• Column descriptions are explicitly provided for key sequencing quality metrics.
• Data is shared under a permissive CC-BY-4.0 license.

Limitations

• Row count is unknown, which may limit suitability assessment.
• Description metadata is limited; actual data quality requires manual inspection after download.

Provenance

Source

figshare

Collection Method

Targeted-capture sequencing of non-small cell lung cancer samples.

Freshness

Last updated 2026-04-11 03:36:54; freshness should be verified.