Leptospira Borgpetersenii Small RNA Annotations and Expression Conditions

Supplementary Material 3 provides detailed annotations for novel small RNAs (sRNAs) identified in Leptospira borgpetersenii serovar Hardjo strains JB197 and HB203. The dataset includes sRNA names, genomic coordinates, lengths, TATA box presence, expression across temperature conditions (29°C and 37°C), and sequence data. It was authored by Ellie J Putz and last updated on 2026-06-01.

Use Cases

• Identify novel small RNA candidates based on read count thresholds mentioned in the description.
• Compare sRNA expression profiles across different bacterial strains (JB197 vs. HB203) and temperature conditions.
• Analyze genomic features like TATA box presence and location (antisense, intergenic) associated with sRNAs.
• Map sRNA coordinates to reference genomes (JB197 or HB203) for functional genomic studies.

Strengths

• Includes specific expression condition data for four experimental setups (JB197 29°C, JB197 37°C, HB203 29°C, HB203 37°C).
• Provides detailed annotation fields such as sequence, length, strand orientation, and genomic coordinates.
• Applies a clear, stated inclusion criterion: sRNAs required at least 250 reads in a minimum of two replicates under at least one condition.

Limitations

• Row count is unknown, which may limit suitability assessment.
• Column-level documentation is absent; field semantics must be inferred after download.
• The dataset is small (58.4 KB), indicating a limited scope focused on specific bacterial strains.

Provenance

Source

figshare

Collection Method

Likely derived from transcriptomic sequencing and analysis of Leptospira borgpetersenii strains.

Freshness

Last updated 2026-06-01 03:19:23; freshness should be verified.