Transposable Element Insertion and Allele Intersection Data

Additional file 4 from a 2026 study by Somia Saidi provides intersection results between transposable element insertions and alleles. The 9.4 KB Excel file compares outputs from the panREPET and Minigraph bioinformatics tools. It categorizes TE copies based on their consensus sequence coverage percentages.

Use Cases

• Benchmarking the agreement between panREPET and Minigraph tools by analyzing their intersection results on TE insertions and alleles.
• Classifying TE copies based on their consensus coverage, using the 95–105% and 75–125% coverage thresholds provided in the description.
• Analyzing the relationship between transposable element insertions and allelic variation within a species' pan-genome.

Strengths

• Data is openly licensed under CC-BY-4.0 for reuse.
• Provides a direct comparison of outputs from two specific bioinformatics tools (panREPET and Minigraph).
• Categorizes data with specific, defined coverage thresholds (95–105% and 75–125%).

Limitations

• Dataset is very small at 9.4 KB, indicating limited scope and likely a small number of rows or observations.
• Specific row count, column names, and sample data are unknown, limiting immediate analysis.
• Data is a supplementary file from a single study, not a standalone, large-scale resource.

Provenance

Source

Figshare, as an additional file for a genomics research publication.

Collection Method

Generated by intersecting the outputs of the panREPET and Minigraph bioinformatics software tools.

Freshness

Last updated on 2026-04-08.