Ayumi Itabashi published a supplementary table of differentially expressed genes (DEGs) on figshare in April 2026. The 3.9 MB XLSX file contains a complete list of DEGs between AGM Sox17⁻ and AGM Sox17⁺ samples, including log2FC, p-value, and FDR values.
Use Cases
- Identify Sox17-induced genes based on positive log2FC values.
- Filter significant gene candidates based on p-value and FDR thresholds.
- Compare gene expression profiles between Sox17-positive and Sox17-negative AGM samples.
- Investigate molecular pathways involved in hematopoietic cluster formation.
Strengths
- The dataset includes a complete list of all genes tested in the RNA-seq analysis.
- Each gene entry includes log2FC, p-value, and FDR (adjusted p-value) metrics.
- The file is available under a CC-BY-4.0 license for open reuse.
Limitations
- Column-level documentation is absent; field semantics must be inferred after download.
- Row count is unknown, which may limit suitability assessment.
- Description metadata is limited; actual data quality requires manual inspection after download.
Provenance
- Source
- figshare
- Collection Method
- RNA-seq analysis of AGM (Aorta-Gonad-Mesonephros) samples.
- Freshness
- Last updated 2026-04-24 03:41:32; freshness should be verified.