Genomes, AlphaFold Models and PAE Images of Jumbo Methanoperedens ECEs

Wetland soil and rice field environments are the source for this collection of jumbo, archaeal extrachromosomal genetic elements. The dataset includes genomic data, AlphaFold protein structure models, and predicted aligned error (PAE) images, totaling 1.4 GB. It was authored by Ling-Dong Shi and last updated on June 2, 2026.

Use Cases

• Predict protein structures based on AlphaFold models mentioned in the description
• Analyze genome architecture based on jumbo extrachromosomal elements
• Study archaeal genetic diversity based on sequences from wetland and rice field environments
• Assess model confidence based on predicted aligned error (PAE) images

Strengths

• Dataset size is 1.4 GB, indicating substantial content
• Includes multiple data modalities: genomic sequences, protein structure models, and images
• Released under a permissive CC-BY-4.0 license
• Last update date is recent (2026-06-02)

Limitations

• Row count is unknown, which may limit suitability assessment
• Column-level documentation is absent; field semantics must be inferred after download
• Description metadata is limited; actual data quality requires manual inspection after download

Provenance

Source

figshare

Freshness

Last updated 2026-06-02 14:38:53

Geography

Wetland soil and rice field environments