Angus Cattle Whole Genome Sequence Data from USDA Germplasm Program

Whole genome sequence data for Bovidae Bos taurus - beef Angus from the USDA National Animal Germplasm Program, repository number 20783. The data consists of 420 total reads from paired-end sequencing, packaged in a tar file containing 14 files in FASTQ format. The dataset was last updated on March 13, 2026.

Use Cases

• Assemble a reference genome for Angus cattle based on the provided paired-end reads.
• Conduct variant calling and population genetics analysis based on whole genome sequence data.
• Compare genetic sequences for germplasm conservation studies based on the repository sample.
• Perform quality control and alignment of sequencing reads based on the forward and reverse read pairs.

Strengths

• Data is from a specific, catalogued germplasm sample (repository number 20783) from the USDA National Animal Germplasm Program.
• Includes 420 total reads from paired-end sequencing, providing complementary forward and reverse sequences.
• Files are provided in the standard FASTQ format, which is widely supported by bioinformatics tools.

Limitations

• Description metadata is limited; actual data quality, read length, and coverage depth require manual inspection after download.
• Column-level documentation is absent; field semantics for the FASTQ files must be inferred from standard formats.
• The dataset's scale (e.g., genome coverage, number of base pairs) is not specified in the description.

Provenance

Source

USDA National Animal Germplasm Program, Department of Agriculture.

Collection Method

Paired-end whole genome sequencing, likely performed by RAPiD-Genomics.

Time Range

null

Freshness

Last updated 2026-03-13 22:45:11.461890; freshness should be verified.

Geography

null