Angus Cattle Whole Genome Sequence Data with Paired-End Reads

The National Animal Germplasm Program provides whole genome sequence data for a single beef Angus animal (Bos taurus) with repository number 29443. The data consists of 420 total reads from paired-end sequencing, resulting in 210 data lines with forward and reverse reads. The data is stored in a tar file containing 14 compressed FASTQ format files.

Use Cases

• Assembling a reference genome for Angus cattle based on the provided paired-end reads.
• Conducting variant calling and population genetics studies based on whole genome sequence data.
• Developing or benchmarking genomic analysis pipelines using real FASTQ data from a specific animal.
• Studying germplasm genetic diversity for conservation programs based on the repository animal data.

Strengths

• Data is from a specific, identified animal (repository number 29443) managed by the National Animal Germplasm Program.
• Uses paired-end sequencing, providing 420 total reads (210 forward, 210 reverse) for more accurate assembly.
• Data is provided in the standard FASTQ format, widely supported by bioinformatics tools.

Limitations

• Row count is unknown, which may limit suitability assessment.
• Column-level documentation is absent; field semantics must be inferred after download.
• Data is from a single animal, limiting population-level inferences.

Provenance

Source

National Animal Germplasm Program, U.S. Department of Agriculture.

Collection Method

Whole genome sequencing using paired-end methodology.

Time Range

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Freshness

Last updated 2026-03-13 22:46:06.396357; freshness should be verified.

Geography

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