Angus Sequence Data: Whole Genome for Bovine Animal 519-2

Angus Sequence Data: Animal 519-2 is a whole genome sequence dataset for a beef Angus (Bovidae Bos taurus) provided by the USDA's National Animal Germplasm Program. The data is in FASTQ format and consists of 14 files from paired-end sequencing, with 210 data lines yielding 420 total reads. The dataset was last updated on March 13, 2026.

Use Cases

• Perform genome assembly for a specific Angus animal based on the provided paired-end reads.
• Conduct variant calling or SNP discovery against a bovine reference genome using the raw sequence data.
• Benchmark sequence alignment tools using the paired-end FASTQ files mentioned in the description.
• Study genetic diversity or traits within the Angus breed using this individual's genomic data.

Strengths

• Data is from paired-end sequencing, which provides forward and reverse reads for improved alignment.
• The dataset contains 210 data lines with 420 total reads, as explicitly stated in the description.
• Files are provided in the standard, widely-used FASTQ format for genomic analysis.

Limitations

• Description metadata is limited; actual data quality requires manual inspection after download.
• Column-level documentation is absent; field semantics must be inferred after download.
• The National Animal Germplasm Program notes it does not have germplasm for this animal, which may limit certain biological studies.

Provenance

Source

Department of Agriculture, National Animal Germplasm Program

Collection Method

Whole genome sequencing, paired-end sequencing.

Freshness

Last updated 2026-03-13 22:46:29.523013; freshness should be verified.