Cryptomonas Proliferans: Genome Assembly and Phylogenomic Analysis Data

Monika Wisniewska provides a dataset supporting phylogenomics, virulence factor analysis, mitochondrial metabolism, and likelihood ratio tests for Cryptomonas proliferans. The dataset includes a full genome assembly, predicted proteins and CDS, functional annotations, a 178-gene phylogenomic alignment, and synteny analysis files. It is structured into directories for assembly, phylogenomics, mitochondrial metabolism, likelihood ratio tests, and synteny.

Use Cases

• Conducting phylogenomic analysis based on a concatenated alignment of 178 genes.
• Investigating virulence factors and mitochondrial metabolism pathways in Cryptomonas proliferans.
• Performing likelihood ratio tests (LRT) for evolutionary hypotheses using the provided summary spreadsheet.
• Analyzing genome synteny and gene order conservation using GENESPACE output files.
• Annotating and exploring the functional genomics of the Cryptomonas proliferans genome assembly.

Strengths

• Includes a complete, annotated genome assembly for Cryptomonas proliferans with GFF/GFF3 and functional annotation files.
• Provides a phylogenomic framework with a PhyloFisher database, a 178-gene alignment, and a maximum likelihood tree with 1000 bootstrap replicates.
• Dataset is structured and comprehensive for specific analyses, covering assembly, phylogeny, metabolism, and statistical tests.

Limitations

• Exact row counts and specific column names for core data files are not provided in the metadata.
• The dataset's temporal and geographic context for the source organism sample is not specified.
• Primary documentation is embedded in directory structure and file names rather than a separate data dictionary.

Provenance

Source

Monika Wisniewska

Collection Method

Likely generated from genome sequencing, assembly, annotation, and subsequent bioinformatic analyses for a specific study.

Freshness

Last updated on 2026-03-23.