Campylobacter jejuni Whole-Genome Assemblies from Swedish Organic Farms

212.5 MB of whole-genome assemblies for Campylobacter jejuni isolates collected from organic poultry farms in Sweden and associated wildlife and livestock. The dataset, authored by Evangelos Mourkas and last updated in June 2026, was generated to study population structure, cross-host transmission, and antimicrobial resistance at the livestock-wildlife interface.

Use Cases

• Analyze bacterial population structure based on whole-genome sequence data
• Investigate cross-host transmission pathways between livestock and wildlife based on isolate collection sources
• Identify antimicrobial resistance genes and patterns within bacterial genomes
• Study the genomic epidemiology of Campylobacter jejuni in organic farming systems

Strengths

• 212.5 MB of genomic data in FASTA format
• Includes isolates from multiple host sources (organic chickens, wild birds, ruminants) for comparative analysis
• Explicitly generated for a study on population structure and antimicrobial resistance

Limitations

• Column-level documentation is absent; field semantics must be inferred after download
• Row count is unknown, which may limit suitability assessment

Provenance

Source

figshare

Collection Method

Whole-genome sequencing of bacterial isolates

Freshness

Last updated 2026-06-04 10:05:42; freshness should be verified

Geography

Sweden