Psidium Guajava New Age Cultivar Genome Annotation with 32,610 Proteins

Rivi Verma published a genome annotation for the guava cultivar 'New Age' (Psidium guajava) on 2026-06-01. The annotation was generated using the BRAKER3 pipeline with ETP mode, incorporating RNAseq data from different tissues and protein sequences. It contains 32,610 predicted proteins and provides files compatible with the snpEff tool.

Use Cases

• Functional annotation of genes based on the 32,610 predicted protein sequences.
• Variant effect prediction using the provided GTF files compatible with the snpEff tool.
• Comparative genomics studies leveraging the latest reference assembly annotation for Psidium guajava.

Strengths

• Contains 32,610 predicted protein sequences.
• Generated using the BRAKER3 pipeline with ETP mode, which integrates RNAseq and protein evidence.
• Files are formatted for compatibility with the widely-used snpEff tool.

Limitations

• The description lacks column-level documentation, requiring users to infer field semantics after download.
• Row count for features like transcripts or CDS is unknown, limiting suitability assessment for some tasks.
• The dataset's freshness should be verified as the last update date is in the future (2026-06-01).

Provenance

Source

Rivi Verma via figshare.

Collection Method

Annotation generated using the BRAKER3 pipeline in ETP mode, utilizing RNAseq data from different tissues and protein sequences.

Freshness

Last updated 2026-06-01 10:36:38.