Genomic and Phenotypic Data of Hypervirulent Klebsiella Pneumoniae Strains

824 hypervirulent Klebsiella pneumoniae strains are described in this dataset from author Yi-Ming Zhong, last updated in June 2026. It includes genomic, phenotypic, and clinical metadata supporting a study on virulence-resistance trade-offs. The data comprises strain characteristics, antimicrobial resistance gene profiles, plasmid replicons, and susceptibility results.

Use Cases

• Analyzing co-occurrence patterns between virulence and resistance genes based on the association matrix.
• Comparing plasmid replicon distribution across bacterial sequence types based on the plasmid replicon table.
• Profiling antimicrobial susceptibility phenotypes and classifying strains as MDR or CRKP based on the susceptibility profile table.
• Investigating patient demographic and clinical factors associated with specific strain types based on the strain metadata.

Strengths

• Includes data for 824 hypervirulent Klebsiella pneumoniae strains.
• Integrates multiple data types: clinical metadata, genomic virulence/resistance markers, plasmid data, and phenotypic susceptibility results.
• Explicitly links tables to specific figures in the associated research manuscript, providing clear context.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count per individual table is unknown, which may limit suitability assessment.
• Data may reflect temporal and geographic bias inherent to the clinical sampling described.

Provenance

Source

figshare

Collection Method

Likely collected from clinical isolates as part of a genomic epidemiology study.

Freshness

Last updated 2026-06-03 03:49:41; freshness should be verified.