Haplotype-Resolved Grape Genomes for 'Shine Muscat' and 'Muscat Hamburg

Haplotype-resolved genome assemblies for two table grape cultivars, 'Shine Muscat' and 'Muscat Hamburg', elucidating berry skin color mechanisms. The dataset includes over 50,000 cultivar-whole genes and millions of sequence variations detected between haplotypes. It was authored by Wen Liu and last updated on 2026-06-02.

Use Cases

• Identify allele-specific expressed genes (ASEGs) related to color traits based on the described gene annotations.
• Analyze the linkage and inheritance patterns of MYB gene haplotypes controlling skin color.
• Enable precision breeding design by utilizing the characterized sequence variations and haplotype combinations.

Strengths

• High-quality haplotype-resolved genomes with over 98.00% BUSCO completeness for both cultivars.
• Identified 50,290 and 45,164 cultivar-whole genes (CWGs) for 'Shine Muscat' and 'Muscat Hamburg', respectively.
• Characterized 9 haplotypes and 23 combinations across 702 germplasm accessions for the color-controlling MYB loci.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• Data may reflect bias inherent to the specific grape cultivars studied.

Provenance

Source

figshare

Collection Method

Haplotype-resolved genome sequencing and assembly.

Freshness

Last updated 2026-06-02 10:36:39; freshness should be verified.