Telomere-to-Telomere Genome Assembly of Wild Soybean Glycine Soja HAAS216

Muhammad Asad's dataset provides a high-quality telomere-to-telomere genome assembly and annotation for the wild soybean Glycine soja accession HAAS216. The assembly spans 1,018.17 Mb, integrates PacBio HiFi, ONT ultra-long reads, and Hi-C data, and contains 48,390 predicted protein-coding genes. It was last updated on April 14, 2026.

Use Cases

• Comparative genomics between wild and cultivated soybean based on the high-quality assembly.
• Structural variation detection based on the resolved repetitive and complex genomic regions.
• Identification of genomic regions associated with stress tolerance and agronomic traits based on the functional gene annotations.

Strengths

• Assembly spans 1,018.17 Mb with 55.84% repetitive sequences resolved.
• Contains 48,390 predicted protein-coding genes, with 98.30% functionally annotated.
• Integrates multiple high-fidelity data sources (PacBio HiFi, ONT ultra-long reads, Hi-C) for chromosome-scale scaffolding.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.

Provenance

Source

Muhammad Asad via figshare.

Collection Method

Assembly integrates PacBio HiFi long reads, Oxford Nanopore Technologies ultra-long reads, and Hi-C data.

Time Range

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Freshness

Last updated 2026-04-14 08:29:24; freshness should be verified.

Geography

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