Genetic Basis of Wood Property Variation in Chamaecyparis hodginsii

A dataset from figshare by Zou yuhong, last updated in April 2026, containing genetic and phenotypic data for the tree species Chamaecyparis hodginsii. It includes 10 phenotypic indicators with three replicates per accession, results from XP-CLR selection sweep analysis, and annotations for deleterious mutations and protein function. The 21.6 MB archive holds files for analysis of variance, population structure, and candidate gene identification.

Use Cases

• Performing genome-wide selection sweep analysis based on XP-CLR results to identify regions under selection.
• Conducting analysis of variance (ANOVA) based on the 10 measured phenotypic indicators to assess trait variation between groups.
• Predicting the functional impact of non-synonymous SNPs using SIFT4G annotations to identify deleterious mutations.
• Investigating protein characteristics such as liquid-liquid phase separation potential and subcellular localization for candidate genes.

Strengths

• Includes 10 distinct phenotypic indicators for wood property analysis.
• Provides three biological replicates per accession for phenotypic measurements.
• Contains results from multiple bioinformatics tools (XP-CLR, SIFT4G, AlphaFold3) for integrated analysis.
• Dataset is openly available under a CC-BY-4.0 license.

Limitations

• Row count and exact sample size are unknown, limiting scale assessment.
• Column-level documentation is absent; field semantics must be inferred after download.
• Description metadata is limited; actual data quality requires manual inspection after download.

Provenance

Source

figshare, author Zou yuhong.

Collection Method

Likely generated from genomic and phenotypic analysis of Chamaecyparis hodginsii populations, using tools like PLINK, IQ-TREE, XP-CLR, and SIFT4G.

Freshness

Last updated 2026-04-26 02:40:43; freshness should be verified.