Bombus huntii Genome Assembly Scripts for NCBI BioProject PRJNA858880

A repository of scripts used to assemble the Bombus huntii (Hunt bumble bee) genome on the USDA SCINet/Mississippi State University High Performance Computing Cluster. The workflow is linked to National Center for Biotechnology Information (NCBI) BioProject PRJNA858880. The dataset includes dependencies such as bamtools v2.5.1, HiFiASM v0.19.3-r572, and BLAST+ v2.0.

Use Cases

• Replicating the Bombus huntii genome assembly based on the described workflow and NCBI BioProject link
• Adapting a high-performance computing (HPC) genome assembly pipeline based on the listed software dependencies
• Studying genome assembly methodologies for bumble bee species based on the provided scripts
• Benchmarking or comparing assembly tools like HiFiASM, minimap2, and blobtoolkit2 based on the workflow

Strengths

• Provides a direct link to the authoritative NCBI BioProject PRJNA858880 for result verification
• Explicitly lists 17 specific software dependencies and versions, such as Singularity v3.8.3 and GenomeScope2 v2.0
• Scripts were executed on a named high-performance computing cluster (USDA SCINet/Mississippi State University HPC Atlas)

Limitations

• Column-level documentation is absent; field semantics must be inferred after download
• Row count is unknown, which may limit suitability assessment for large-scale analysis

Provenance

Source

Department of Agriculture

Collection Method

Scripts used in a genome assembly workflow performed on an HPC cluster.

Time Range

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Freshness

Last updated 2026-03 13 22:44:10.313575; freshness should be verified

Geography

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