Complete Chloroplast Genome Sequence of Zephyranthes Carinata

158,355 base pairs comprise the first complete chloroplast genome for the medicinal and ornamental plant Zephyranthes carinata. The genome contains 129 annotated functional genes and exhibits a 37.81% GC content. Fengjin Liu published this resource in April 2026.

Use Cases

• Conduct phylogenetic analysis using the annotated gene sequences to place Zephyranthes carinata within the Hippeastrinae subtribe.
• Compare structural features like LSC (86,576 bp) and SSC (18,313 bp) region lengths with other species for chloroplast evolution studies.
• Utilize the 86 protein-coding, 35 tRNA, and 8 rRNA gene annotations for designing molecular markers for species identification.
• Analyze the overall GC content (37.81%) and IR region structure (26,733 bp each) for comparative genomics across plant families.

Strengths

• First complete chloroplast genome for Zephyranthes carinata, a previously unsequenced species.
• Genome is fully annotated with 129 functional genes, providing a detailed genetic map.
• Clear structural metrics: total length 158,355 bp with defined LSC, SSC, and IR regions.

Limitations

• Dataset is small (9.2 MB), containing data for a single species, limiting broad comparative analysis.
• No explicit sample size or row count provided for the underlying sequence or annotation data.
• Phylogenetic analysis is based on one genome, requiring integration with external datasets for robust tree building.

Provenance

Source

Fengjin Liu via figshare.

Collection Method

Generated using high-throughput sequencing technology.

Time Range

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Freshness

Last updated April 2026.

Geography

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