Chromosome-Level Genome Assembly of the Bark Beetle Ips Calligraphus

188.8 MB of genomic data files provide a chromosome-level assembly for the bark beetle species Ips calligraphus. The resource includes genome annotation files such as repeat GFF, gene GFF, CDS, and Pep files, created by Jinwu He and published in April 2026.

Use Cases

• Identify gene structures and coding sequences (CDS) for functional annotation of Ips calligraphus.
• Analyze repeat element distributions using the repeat GFF file for evolutionary studies.
• Perform comparative genomics using the provided protein sequences (Pep files) against other beetle species.
• Assemble and annotate chromosomal-level features using the gene GFF file for genome browser visualization.

Strengths

• Chromosome-level assembly provides high continuity for genomic analysis.
• Includes multiple annotation file types (GFF, CDS, Pep) for diverse bioinformatics workflows.
• Dataset is 188.8 MB, indicating a substantial genomic resource.

Limitations

• No row or sequence count provided, making scale of annotation unclear.
• Lack of metadata on assembly quality metrics (e.g., N50, BUSCO scores).

Provenance

Source

Jinwu He via figshare.

Collection Method

Genome sequencing and annotation, specific methodology unknown.

Freshness

Last updated April 2026.