Spider-Harvestman Gene Expression and Regulation Data for WGD Study

396.5 MB of genomic data supporting a study on whole-genome duplication. The dataset includes STAR read counts for DESeq2, MACS2 called peaks for DiffBind, genome annotations, orthogroups, and ohnologue tables. It was authored by Madeleine Aase-Remedios and last updated on 2026-05-13.

Use Cases

• Differential gene expression analysis based on STAR read counts for DESeq2 input
• Differential binding analysis based on MACS2 called peaks for DiffBind input
• Genome annotation and orthology assignment based on provided GTF files and orthogroup tables
• Identifying and analyzing ohnologues (paralogs from WGD) based on the supporting table

Strengths

• Data is directly linked to a peer-reviewed publication (DOI: 10.1093/gbe/evaf238)
• Associated analysis code is available in a public GitHub repository
• Dataset size of 396.5 MB indicates substantial genomic content
• Released under a permissive CC-BY-4.0 license

Limitations

• Column-level documentation is absent; field semantics must be inferred after download
• Row count is unknown, which may limit suitability assessment
• Description metadata is limited; actual data quality requires manual inspection after download

Provenance

Source

figshare

Collection Method

Likely generated from sequencing and bioinformatic analysis for a specific research project.

Freshness

Last updated 2026-05-13 18:17:18