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505 core multiple nucleotide polymorphism (MNP) loci were screened from genome sequencing of 30 representative accessions of Polygonatum cyrtonema. The marker panel was validated on 80 accessions, achieving an identification accuracy rate of 99.90% and assigning a unique molecular ID code to each cultivar. The data was published by Min Tang on figshare in March 2026 under a CC-BY-4.0 license.
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