Multi-Omics Data on Probiotic Effects in Shrimp Hepatopancreas

A research article presents multi-omics data from a 90-day aquaculture trial investigating the effects of probiotic Lactobacillus salivarius GZPH2 on Litopenaeus vannamei shrimp. The study, authored by Farhana Najnine and published on figshare in April 2026, combines histology, mineral profiling, 16S/18S rRNA sequencing, and 4D-DIA proteomics. It details probiotic-induced changes in hepatopancreatic structure, microbiome, and protein expression under farm conditions.

Use Cases

• Compare single-strain vs. mixed-strain probiotic effects on shrimp growth and survival based on the described trial results.
• Analyze shifts in hepatopancreatic microbial community structure based on 16S/18S rRNA sequencing data mentioned in the description.
• Investigate proteomic pathways related to metabolism and immunity based on the 4D-DIA proteomics results for crustin-like proteins and antioxidant enzymes.
• Study correlations between probiotic supplementation, mineral accumulation (Mg, Fe, Ca, Se), and tissue morphology described in the results.

Strengths

• Integrated multi-omics approach combining histology, mineral profiling, sequencing, and proteomics.
• Results include specific quantitative findings, such as a 26–27% increase in biomass relative to the control group.
• Data is openly shared under a CC-BY-4.0 license, facilitating reuse.

Limitations

• The primary data file is a 2.5 MB PDF; underlying raw datasets (e.g., sequence reads, proteomics tables) are not directly accessible.
• Column-level documentation and sample data are unavailable; data structure must be inferred from the article.
• Row count is unknown, which may limit suitability assessment for computational analysis.

Provenance

Source

figshare

Collection Method

Data generated from a controlled 90-day feeding trial under tropical semi-intensive shrimp culture conditions.

Time Range

Trial duration was 90 days; specific years not stated.

Freshness

Last updated 2026-04-16 05:24:54.

Geography

Study conducted under tropical semi-intensive culture conditions; specific location not stated.