PhyloSelect: Demonstration Datasets for Phylogenetic and Functional Gene Analysis

A 59.3 MB collection of demonstration datasets for the PhyloSelect workflow, uploaded to figshare by yi shi and last updated on 2026-05-26. The repository includes example files for gene-level selection analysis, site-level evolutionary analysis, environmental association, and structural functional comparison. These datasets are intended for software testing, workflow demonstration, and reproducibility verification.

Use Cases

• Testing software modules for target gene recovery based on the described example datasets.
• Demonstrating a workflow for selection analysis using the provided gene-level demo.
• Verifying reproducibility of site-level evolutionary analysis pipelines.
• Familiarizing users with environmental association analysis (EnvAssoc) procedures.
• Validating structural functional comparison and molecular docking analysis steps.

Strengths

• Dataset is 59.3 MB, providing a contained set of files for testing.
• Includes four distinct demonstration modules covering major analysis steps.
• Released under a permissive CC-BY-4.0 license.
• Contains simulated positive-control scenarios for verifying analytical modules.

Limitations

• Row count and specific column-level documentation are unknown.
• Description metadata is limited; actual data quality requires manual inspection after download.
• Datasets are intended for demonstration and validation only, not as independent biological evidence.

Provenance

Source

figshare

Collection Method

Created as demonstration material for the PhyloSelect software workflow.

Freshness

Last updated 2026-05-26 07:07:42; freshness should be verified.