Deng-Reads: Single-Cell RNA Sequencing Data with Cell Type Labels

Deng, Q., Ramskold, D., Reinius, B. & Sandberg authored this single-cell RNA sequencing dataset. The data has been transposed and includes cell type annotations from the original source code. Column names were changed to a numerical order to avoid issues with name length.

Use Cases

• Benchmarking cell type classification models based on annotated cell types.
• Analyzing gene expression patterns across different cell types.
• Developing feature selection methods for high-dimensional single-cell data.
• Training models for biological data where column names are long or problematic.

Strengths

• Includes cell type annotations (cell_type1, cell_type2) derived from the original source code.
• Column names were modified to a numerical order to address technical naming issues.
• Released under the permissive CC-BY-4.0 license.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count, file formats, and last update date are unknown, limiting suitability assessment.
• Description metadata is limited; actual data quality requires manual inspection after download.

Provenance

Source

Deng, Q., Ramskold, D., Reinius, B. & Sandberg

Collection Method

Data was transposed and cell type labels were added according to the original source code.

Time Range

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Freshness

Last updated date is unknown; freshness unverified.

Geography

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