Freshwater Bacterial Isolate RNA-seq Sample Characteristics and Culture Conditions

Detailed metadata for an RNA-seq dataset of freshwater bacterial isolates includes strain information and culture conditions under iron-replete and iron-limited treatments. The 8.9 KB XLSX file, authored by Gi Uk Hong and last updated in April 2026, supports the interpretation and reproducibility of transcriptome analyses. Row count and specific column details are not provided in the metadata.

Use Cases

• Reproducing transcriptome analyses based on the provided strain and culture condition metadata.
• Comparing gene expression patterns between iron-replete and iron-limited treatments for the described bacterial isolates.
• Integrating this sample characteristic data with corresponding RNA-seq count matrices for differential expression analysis.

Strengths

• File size is precisely 8.9 KB, indicating a focused metadata table.
• Metadata explicitly includes key experimental variables: strain information, culture conditions, and treatment status.
• Released under a permissive CC-BY-4.0 license for broad reuse.

Limitations

• Row count is unknown, which may limit suitability assessment.
• Column-level documentation is absent; field semantics must be inferred after download.
• The description metadata is limited; actual data quality requires manual inspection.

Provenance

Source

figshare

Collection Method

Likely generated as part of a laboratory study on freshwater bacterial transcriptomics.

Freshness

Last updated 2026-04-29 06:44:11; freshness should be verified.