Shewanella oneidensis MR-1 Base Editing Data for Enhanced Pollutant Degradation

A dataset from a research paper describes the development of a base editing system for the bacterium Shewanella oneidensis MR-1. The work, authored by Lei Cheng from the University of Science and Technology of China, engineered strains with expanded carbon source utilization, which exhibited higher degradation rates for azo dyes and organoarsenic compounds compared to the wild type. The base editing system achieved an 87.5% efficiency for double-locus simultaneous editing.

Use Cases

• Training models to predict gene editing outcomes based on base editing window characteristics.
• Analyzing the relationship between expanded carbon source utilization and pollutant degradation rates.
• Benchmarking the efficiency of different genetic engineering tools for exoelectrogenic bacteria.

Strengths

• The base editing system achieved a reported 87.5% efficiency for double-locus simultaneous editing.
• Engineered strains demonstrated a higher degradation rate for specific pollutants (azo dyes, organoarsenic compounds) than the wild type.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• Data may reflect bias inherent to paperswithcode, focusing on a single research project's results.

Provenance

Source

University of Science and Technology of China

Collection Method

Likely contains experimental results from genetic engineering and pollutant degradation assays.