Eurytemora affinis Indel Mutation Analysis Scripts and Data

A 1.6 GB collection of R scripts, CSV, and text files used to filter and analyze sequence data for a study on spontaneous insertion-deletion mutations in the copepod Eurytemora affinis species complex. The dataset, authored by Jacob Fredette-Roman, includes commands for generating figures from the associated manuscript. It was last updated on June 2, 2026.

Use Cases

• Reproduce mutation rate analysis based on the provided R script and sequence data.
• Benchmark indel detection pipelines using the processed sequence data.
• Adapt figure generation code for similar genomic data visualization tasks.

Strengths

• Includes the complete R script (Eaff_Master.R) used for analysis and figure generation in the published study.
• Dataset size is 1.6 GB, indicating a substantial amount of underlying sequence or processed data.
• Released under a permissive CC-BY-4.0 license, allowing for reuse and modification.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment for specific modeling tasks.
• Description metadata is limited; actual data quality requires manual inspection after download.

Provenance

Source

Jacob Fredette-Roman via figshare

Collection Method

Scripts and data generated for a specific genetics research manuscript.

Freshness

Last updated 2026-06-02 15:39:58