Extended Data Table S1: Genomic, antimicrobial resistance, plasmid, and virulence characte

Extended Data Table S1 supports a study on ESBL-producing Escherichia coli isolates from an orthopaedic ward in Mwanza, Tanzania. The dataset, created by Gerald Mboowa and last updated in April 2026, provides integrated isolate-level metadata and genomic features. It underpins comparative genomic and phylogenetic analyses of resistance burden and potential transmission dynamics in a hospital setting.

Use Cases

• Analyze antimicrobial resistance gene profiles based on detected AMR genes and associated antimicrobial classes
• Investigate plasmid-mediated resistance dissemination based on identified plasmid replicon content
• Study bacterial virulence potential based on detected virulence-associated genes
• Perform comparative genomic analysis based on provided sequence similarity and clustering metrics
• Assess multidrug resistance classification based on resistance to three or more antimicrobial classes

Strengths

• Dataset integrates multiple data types including sample metadata, genomic characteristics, AMR, plasmid, and virulence data.
• File is available in XLSX format, which is widely accessible for analysis.
• Dataset is licensed under CC-BY-4.0, permitting open sharing and reuse.

Limitations

• Row count is unknown, which may limit suitability assessment.
• Column-level documentation is absent; field semantics must be inferred after download.
• Data may reflect geographic and source bias inherent to a single hospital ward in Tanzania.

Provenance

Source

figshare

Collection Method

Genomic characterization of bacterial isolates from patients and the hospital environment.

Time Range

Collection dates are included in the sample metadata, but the specific range is not stated.

Freshness

Last updated 2026-04-15 02:45:23; freshness should be verified.

Geography

Isolates were collected from an orthopaedic ward in Mwanza, Tanzania.