Mouse Brain Single-Cell and Single-Nucleus Atlas Files for Cluster Replicability

Leon French provides 3.8 GB of additional large data files supporting the study 'Cluster replicability in single-cell and single-nucleus atlases of the mouse brain.' The files include pretrained Metaneighbor models, processed data from multiple brain atlas projects, and results from spatial and marker analyses. The dataset was last updated on April 27, 2026.

Use Cases

• Evaluating cluster replicability across different mouse brain atlas datasets based on the provided pretrained models and results files.
• Analyzing spatial relationships between cell types based on the spatial_per_cell_data files mentioned in the description.
• Identifying recurring marker genes for cell types based on the MetaMarkers files described in the dataset.
• Benchmarking cell type classification methods using the provided pretrained models and prediction scores.

Strengths

• Dataset size is 3.8 GB, indicating substantial data volume.
• Includes pretrained models (Metaneighbor) for direct analysis use.
• Data originates from multiple established mouse brain atlas projects (e.g., Macosko, Zeng, MERFISH) as indicated by file paths.
• License is CC-BY-4.0, permitting broad reuse with attribution.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• Description metadata is limited; actual data quality requires manual inspection after download.

Provenance

Source

figshare, authored by Leon French.

Collection Method

Files are outputs and supporting data from a replicability study on mouse brain atlases.

Time Range

Files reference dates from 2023 and 2024 in their names, suggesting underlying data from that period.

Freshness

Last updated 2026-04-27 19:28:00; freshness should be verified.

Geography

Mouse brain data, likely from laboratory strains (e.g., C57BL6J).