Bin Liu from Shanghai Jiao Tong University proposes a role for the COL13 gene in hypocotyl elongation in Arabidopsis thaliana. The research demonstrates that COL13 RNA accumulates in hypocotyls and its disruption leads to longer hypocotyls in red light, while overexpression results in shorter hypocotyls. The study identifies a HY5-COL3-COL13 regulatory chain and a possible COP1-dependent feedback pathway for mediating hypocotyl elongation.
Use Cases
- Modeling gene regulatory networks based on the described HY5-COL3-COL13 chain.
- Studying light signal transduction pathways in early plant development based on the role of CONSTANS-LIKE (COL) family members.
- Investigating feedback mechanisms in plant growth regulation based on the proposed COP1-dependent COL3-COL13 pathway.
- Analyzing genetic interactions affecting hypocotyl elongation based on the described T-DNA insertion, RNAi, and overexpression experiments.
Strengths
- Research is associated with a specific academic institution, Shanghai Jiao Tong University.
- The description details specific genetic, genomic, and biochemical assays used to establish the regulatory pathway.
- The dataset is published under an Open Access (green) license.
Limitations
- Column-level documentation is absent; field semantics must be inferred after download.
- Row count is unknown, which may limit suitability assessment.
- Last update date is unknown; freshness unverified.
Provenance
- Source
- paperswithcode
- Collection Method
- Likely contains experimental data from genetic, genomic, and biochemical assays on Arabidopsis thaliana seedlings.