FLiPPR: Limited Proteolysis Mass Spectrometry Data Processor

A dataset processed by the FLiPPR pipeline built on FragPipe for Limited Proteolysis (LiP) mass spectrometry experiments. The data was contributed by Edgar Manriquez‐Sandoval of Johns Hopkins University and is available via the paperswithcode platform under an Open Access license. The specific temporal coverage and dataset size are not detailed in the available metadata.

Use Cases

• Analyzing protein structural changes based on Limited Proteolysis (LiP) mass spectrometry data.
• Benchmarking data processing workflows for proteomics experiments.
• Training or validating computational models for protein-ligand interaction prediction using processed LiP-MS data.

Strengths

• Processed using the specialized FLiPPR pipeline built on the established FragPipe platform.
• Associated with Johns Hopkins University, suggesting academic research provenance.

Limitations

• Row count and dataset scale are unknown, which may limit suitability assessment.
• Column-level documentation is absent; field semantics must be inferred after download.
• Last update date is unknown; freshness unverified.

Provenance

Source

paperswithcode

Collection Method

Fully processed using the FLiPPR pipeline and accompanying Python scripts.