Synapsis davidis Chromosome-Level Genome Annotation with Functional and Repeat Analysis

Genome annotation files for the chromosome-level genome assembly of the insect Synapsis davidis. The dataset includes structural gene annotation, coding and protein sequences, functional annotation from multiple databases, and non-coding RNA and repeat annotations. It was created by author Xiaobo Xu and last updated on May 12, 2026.

Use Cases

• Comparative genomics analysis based on the provided protein and coding sequences.
• Functional gene characterization using the eggNOG-mapper, InterProScan, and Pfam annotations.
• Studying genome structure and repetitive elements based on the RepeatMasker and soft-masked genome assembly outputs.
• Non-coding RNA discovery and analysis based on the tRNA prediction and Rfam/Infernal annotation results.

Strengths

• Includes multiple complementary annotation types: structural, functional, non-coding RNA, and repeat annotation.
• Functional annotation leverages results from several established databases and tools, including eggNOG-mapper, InterProScan, Pfam, NR, and UniRef90.
• The genome assembly is described as chromosome-level and is provided in a soft-masked format for repeat analysis.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count and overall dataset size are unknown, which may limit suitability assessment.

Provenance

Source

figshare, author Xiaobo Xu.

Collection Method

Structural annotation generated using BRAKER; functional annotation from eggNOG-mapper, InterProScan, Pfam/HMMER, and DIAMOND; repeat annotation from RepeatMasker.

Freshness

Last updated 2026-05-12 07:48:03; freshness should be verified.