Ranavirus Genomic Sequences for Phylogenetic Analysis

A genomic analysis study identified 44 core genes across 32 ranavirus genome sequences. The research, conducted by Wenjie Zhang from Zunyi Medical University, constructed multiple phylogenetic trees to explore ranavirus taxonomy. It concluded by selecting four genes suitable for convenient and accurate taxonomic identification.

Use Cases

• Constructing phylogenetic trees based on identified core genes.
• Analyzing ranavirus subspecies classification (GIV-like, EHNV-like, FV3-like, CMTV-like).
• Validating taxonomic positions using dot plot analysis.
• Selecting optimal marker genes for ranavirus phylogenetics via recombination and saturation analysis.

Strengths

• Analysis is based on 32 ranavirus genome sequences.
• Identified 44 core genes for phylogenetic comparison.
• Taxonomic classification was validated across three different phylogenetic tree methods.

Limitations

• The specific data files, column definitions, and row counts are unknown.
• Last update date is unknown; freshness unverified.
• Data may reflect publication bias inherent to the paperswithcode platform.

Provenance

Source

Zunyi Medical University

Collection Method

Genomic sequences were analyzed using PanX and phylogenetic methods.