Haplotype-Resolved Genome Assemblies and Annotations for Three Korean Rubus Species

Gene and transposable element annotations for six haplotype-resolved genome assemblies of three Korean native Rubus species: R. coreanus, R. crataegifolius, and R. phoenicolasius. The dataset includes 24 annotation files in GFF3 and PEP formats, totaling 682.0 MB, and was published by Hyeonseon Park on figshare in June 2026. Annotations were generated using BRAKER3 and EDTA tools, incorporating RNA-seq data and a pan-genome TE library.

Use Cases

• Comparative genomic analysis based on chromosome-level gene annotations for seven pseudomolecules.
• Functional annotation and ortholog inference based on predicted protein sequences.
• Pan-genome construction and analysis based on haplotype-resolved assemblies for three species.
• Transposable element landscape study across Rubus species based on pan-genome TE annotations.

Strengths

• Provides annotations for six haplotype-resolved assemblies, offering insights into genetic variation.
• Includes chromosome-level annotations for seven pseudomolecules, enabling anchored comparative analysis.
• TE annotations are consistent across 12 Rubus genomes due to a shared pan-genome consensus library.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment for certain analyses.

Provenance

Source

figshare

Collection Method

Annotations generated using BRAKER3 and EDTA tools with RNA-seq data and a Rubus protein database.

Freshness

Last updated 2026-06-01 02:15:25; freshness should be verified.

Geography

Korean native species