Bacillus pseudomycoides Digital DNA-DNA Hybridization Results

Digital DNA-DNA hybridization (dDDH) values for the bacterial strain Bacillus pseudomycoides CHAES I 2_2, calculated via the Type (Strain) Genome Server (TYGS). The analysis was performed by Alina Kharchuk and results were generated on 2026-01-30. The dataset is small, comprising a single Excel file of 9.8 KB.

Use Cases

• Determine species boundaries for Bacillus pseudomycoides using dDDH values and a 70% clustering threshold.
• Perform subspecies clustering analysis using the provided 79% dDDH threshold.
• Infer phylogenetic relationships using intergenomic distances calculated via the GBDP algorithm 'trimming' and distance formula d5.
• Assess branch support in phylogenetic trees using the 100 pseudo-bootstrap replicates provided.
• Identify closely related type strains via MASH distances and 16S rDNA gene sequence BLAST scores.

Strengths

• Results generated by the authoritative TYGS platform using standardized methods.
• Analysis includes methodological updates and features from cited literature.
• Provides digital DDH values with calculated confidence intervals.

Limitations

• Dataset is extremely small (9.8 KB), containing results for a single bacterial strain.
• No sample data or column descriptions are available, limiting immediate interpretability.
• The analysis date (2026-01-30) is a future date, which may indicate a placeholder or error.

Provenance

Source

Type (Strain) Genome Server (TYGS) and List of Prokaryotic names with Standing in Nomenclature (LPSN).

Collection Method

Whole genome-based taxonomic analysis using MASH, GBDP, and FASTME for phylogenetic inference.

Time Range

Analysis date: 2026-01-30.

Freshness

Last updated on platform: 2026-04-04.