Symphodus Tinca Reference Genome Assembly and Annotation

Ainhoa López provides a reference genome for the marine fish Symphodus tinca. The dataset includes genome assembly, annotation, and a separate mitogenome, totaling 312.7 MB in FASTA and GFF formats. It was last updated on May 14, 2026.

Use Cases

• Assembling a reference genome for Symphodus tinca based on PacBio and Illumina sequencing data mentioned in the description.
• Annotating protein-coding genes and non-coding RNAs using the BRAKER and FEELnc tools listed in the description.
• Analyzing the mitochondrial genome of Symphodus tinca using the MitoHifi pipeline referenced in the description.

Strengths

• Dataset size is 312.7 MB, indicating substantial genomic content.
• Includes both nuclear genome and separate mitogenome data.
• Uses established bioinformatics tools like hifiasm, BRAKER, and MitoHifi, as listed in the description.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• Description metadata is limited; actual data quality requires manual inspection after download.

Provenance

Source

figshare

Collection Method

Genome assembly and annotation using PacBio and Illumina sequencing platforms.

Freshness

Last updated 2026-05-14 16:08:10