Eukaryotic Genome Editing Components: IES and OES Retention Scores

Retention scores for Internal Eliminated Sequences (IESs) and Optional Eliminated Sequences (OESs) from a study of natural eukaryotic genome editing. The dataset includes supplementary files with Spearman's correlation statistics for IESs of different lengths and for OESs. Data was produced by Estienne C. Swart at the University of Bern for the associated manuscript.

Use Cases

• Correlating IES retention scores with genomic features based on the provided correlation statistics.
• Comparing retention patterns between IESs and OESs using the dedicated comparison statistics files.
• Analyzing sequence-dependent retention for IESs shorter than 35bp or longer than 500bp using the stratified correlation files.
• Studying OES sequence properties using the provided FASTA file of OES sequences.

Strengths

• Includes multiple supplementary data files with specific statistical analyses, such as Spearman's correlation comparisons.
• Data is stratified by sequence feature, with separate files for IESs <=35bp and >=500bp.
• Data is associated with a peer-reviewed manuscript, providing academic context.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• Last update date is unknown; freshness unverified.

Provenance

Source

University of Bern

Collection Method

Likely derived from genomic sequencing and analysis for the associated research manuscript.