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Description
Indonesian Microbiome Ecology and Evolution (IndoMEE) version 1 provides species-level relative abundance data from gut metagenomes. The dataset covers 116 individuals from 8 communities across Indonesia and 109 Singaporeans, representing hunter-gatherer, agricultural, and urban lifestyles. It was created by Clarissa Febinia and published in 2025.
Use Cases
Compare gut microbiome composition based on lifestyle (hunter-gatherer, agricultural, urban) mentioned in the description
Analyze species-level relative abundance patterns across different geographic communities in Indonesia
Study the social microbiome's variation during rural-to-urban transitions as referenced in the source paper
Strengths
Contains data from 225 total individuals (116 Indonesians, 109 Singaporeans)
Samples represent 8 distinct Indonesian communities across a range of lifestyles
Data is associated with a peer-reviewed 2025 publication in Cell Reports
Limitations
Column-level documentation is absent; field semantics must be inferred after download
Row count is unknown, which may limit suitability assessment
Provenance
Source
figshare
Collection Method
Species-level reference genomes (MAGs) assembled from short-read gut metagenomes.
Freshness
Last updated 2026-05-10 19:31:25
Geography
Indonesia (8 communities) and Singapore
License is CC-BY-4.0; users must cite the associated paper.