Methylobacter_1 MAG: Genome Bins and Amino Acid Sequences from Biofilm Study

ENA BioProject PRJEB108241 provides genome bins from inoculum and anodic biofilm samples, including medium- and high-quality bins. The dataset contains .fna files, a bin_info.tsv with quality metrics and taxonomic classifications, and separate amino acid FASTA sequences for the Methylobacter_1 MAG. Peter A.G. ter Horst published this 129.1 MB dataset on figshare in May 2026 to support reproducibility of genome-resolved analyses.

Use Cases

• Assessing genome quality and contamination based on the provided completeness and contamination metrics
• Estimating relative abundance of microbial taxa in biofilm samples using the CoverM-derived abundance estimates
• Performing taxonomic classification and phylogenetic placement using the GTDB-Tk-based classifications
• Analyzing the amino acid sequences of the Methylobacter_1 MAG for functional or comparative genomics

Strengths

• Includes a complete set of bins from both inoculum and anode biofilm samples, supporting comparative analysis
• Provides consolidated genome quality metrics (completeness, contamination) and taxonomic classifications in a TSV file
• Dataset size is 129.1 MB, indicating a medium-scale collection of genomic data
• Released under a CC-BY-4.0 license, permitting reuse with attribution

Limitations

• Row count is unknown, which may limit suitability assessment
• Column-level documentation is absent; field semantics must be inferred after download
• Description metadata is limited; actual data quality requires manual inspection after download

Provenance

Source

figshare, corresponding to ENA BioProject PRJEB108241

Collection Method

Genome bins recovered from inoculum and anodic biofilm samples, processed with Aviary and GTDB-Tk

Freshness

Last updated 2026-05-01 09:10:31; freshness should be verified