Lva_GenomicSignatures: SNP Data for Alpine Tree Frog Selection Analysis

Raw DArTseq SNP data and metadata for the endangered alpine tree frog Litoria verreauxii alpina, supporting analyses of loci under selection. The repository includes sample metadata, R scripts for analysis, and NCBI BLAST results for annotation. It was authored by Alexander Wendt and last updated on 2026-05-03.

Use Cases

• Conducting selection scans based on DArTseq SNP data mentioned in the description.
• Reproducing population genetics analyses using the provided R scripts and BayPass input/output files.
• Annotating candidate loci under selection using the included NCBI BLAST results and annotation tables.
• Studying population structure and genetic diversity based on sample metadata with population assignments and collection year.

Strengths

• Includes raw DArTseq SNP data, which is a high-throughput genotyping method.
• Provides R scripts for the full analysis workflow from data import to visualization.
• Contains NCBI BLAST results and annotation tables for functional interpretation of loci.
• Sample metadata includes population assignments and collection year, enabling reproducible analyses.

Limitations

• Precise geographic location information is omitted to protect sensitive sites, limiting spatial analysis.
• Column-level documentation is absent; field semantics must be inferred after download.
• Row count and file sizes are unknown, which may limit suitability assessment.

Provenance

Source

figshare

Collection Method

DArTseq genotyping of Litoria verreauxii alpina samples.

Freshness

Last updated 2026-05-03 00:48:55; freshness should be verified.

Geography

Alpine regions (specific locations omitted); species is Litoria verreauxii alpina.