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36 apiaries across Kosovo were sampled between 2019 and 2024 for nine viruses, two Vairimorpha species, and Paenibacillus larvae. 97.2% of apiaries had at least one virus, with BQCV and AmFV being the most prevalent at 83.3%. The dataset, created by Beqe Hulaj, includes results on pathogen co-occurrence and genotyping of P. larvae isolates.
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