Multi-omics Linkage Analysis for the Striatopallidal Region from Eight Mouse Strains

A multi-omic snATAC-/snRNA-seq dataset from the striatum region of the brain. Striata were collected from eight genetically diverse inbred mouse strains, representing the founders of the Diversity Outbred and Collaborative Cross populations. The dataset was published by Olivier Poirion in 2024 and last updated on figshare in May 2026.

Use Cases

• Identify enhancer-promoter links based on genomic coordinates in BEDPE files.
• Analyze cell-type-specific regulatory interactions based on the designated file names.
• Compare linkage results from separate versus combined analyses of Drd1 and Drd2 neurons.
• Integrate snATAC-seq and snRNA-seq data for multi-omic correlation studies.

Strengths

• Data is derived from eight genetically diverse inbred mouse strains, providing a model for genetic analysis of complex traits.
• The dataset includes results from both separate and combined analyses of two neuron types.
• Links to the analysis software (Enhlinktools) and the peer-reviewed publication are provided.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• The description metadata is limited; actual data quality requires manual inspection after download.

Provenance

Source

figshare

Collection Method

Enhlink analyses performed on snATAC-seq and snRNA-seq data from mouse striatum.

Freshness

Last updated 2026-05-14 20:55:54; freshness should be verified.