Multiple Alignment Data for Phylogenetic Analysis of Five Nuclear Loci

Multiple sequence alignment files for phylogenetic analysis based on five nuclear loci (ITS, LSU, tef1, rpb1, rpb2) and a combined dataset. The dataset is 1.4 MB in size and was authored by Akihiko Kinoshita. It was last updated on 2026-04-21.

Use Cases

• Constructing phylogenetic trees based on the combined nuclear loci dataset.
• Comparing evolutionary relationships using individual alignments for ITS, LSU, tef1, rpb1, and rpb2.
• Testing phylogenetic inference methods with multi-locus alignment data.
• Training models for sequence alignment or tree-building algorithms using the provided FASTA files.

Strengths

• Dataset is 1.4 MB, indicating a focused and manageable size for analysis.
• Alignments are provided for five specific nuclear loci and a combined dataset, offering multiple analytical entry points.
• The dataset uses the open CC-BY-4.0 license, permitting broad reuse with attribution.

Limitations

• Row count and column-level documentation are absent, requiring manual inspection after download.
• The description is brief, lacking details on the source organisms or the alignment methodology.

Provenance

Source

Akihiko Kinoshita via figshare.

Collection Method

Likely generated from sequencing data for phylogenetic analysis.

Freshness

Last updated 2026-04-21 01:18:51; freshness should be verified.