NCMD: Genome Assembly and Gene Annotation for Nanchukmacdon

Nanchukmacdon genome data includes a chromosome-level assembly built from PacBio and short-read sequencing. The assembly comprises 1,942 high-quality contigs and is annotated with 20,588 protein-coding genes averaging 47.06 Kbp in length, plus non-coding RNAs. The data was produced by Bioinfo lab and sequencing reads are available under NCBI SRA project PRJNA967127.

Use Cases

• Comparative genomics analysis based on the chromosome-level assembly and related species information.
• Gene structure and function studies based on the 20,588 annotated protein-coding genes.
• Non-coding RNA discovery based on annotations for rRNA, snRNA, miRNA, and tRNA.
• Genome assembly method development based on the described reference-guided and RACA-based pipeline.

Strengths

• Chromosome-level assembly constructed using an improved RACA method.
• 20,588 annotated protein-coding genes with an average length of 47.06 Kbp.
• Assembly supported by 80.14x raw PacBio subreads and polished with short reads.

Limitations

• Description metadata is limited; actual data quality requires manual inspection after download.
• Column-level documentation is absent; field semantics must be inferred after download.
• Row count and file formats are unknown, which may limit suitability assessment.

Provenance

Source

Bioinfo lab.

Collection Method

Genome assembly from PacBio and short-read sequencing of an adult male Nanchukmacdon; gene annotation from RNA sequencing of 24 tissues.