Newick Tree Files for Vibrio Phylogeny and Genome Analysis

Two Newick tree files from a research paper on Vibrio community ecology. The files represent a maximum-likelihood tree from a pyrH gene alignment and a draft genome ANI tree. The data was authored by Alexandra Stiffler and published on figshare under a CC-BY-4.0 license.

Use Cases

• Visualizing phylogenetic relationships among Vibrio isolates based on the pyrH gene alignment.
• Comparing draft genome similarity using Average Nucleotide Identity (ANI) analysis.
• Integrating tree data with other microbial community metrics from the associated research.

Strengths

• Data is directly linked to a specific research paper (Fig. 2 and Fig. 4), providing clear context.
• Published under a permissive CC-BY-4.0 license for reuse.
• File size is small (12.0 KB), ensuring quick download and processing.

Limitations

• Row count and column-level metadata are unknown, limiting suitability assessment.
• The dataset is very small in scope, containing only two specific tree files from one study.
• Description metadata is limited; actual data structure requires manual inspection after download.

Provenance

Source

figshare, authored by Alexandra Stiffler.

Collection Method

Generated from phylogenetic and genomic analyses for a specific research paper.

Freshness

Last updated 2026-03-17 14:59:38; freshness should be verified.

Geography

Samples were collected from pelagic Sargassum, seagrass, and seawater across a natural 10°C gradient.