GSE176078: Processed scRNA-seq Analysis for Triple-Negative Breast Cancer

Processed analytical outputs derived from the public NCBI GEO dataset GSE176078, a single-cell RNA sequencing atlas for triple-negative breast cancer. The dataset contains AnnData objects, model outputs, immune phenotype scores, and downstream computational results from a specific PDCD1/CD2 analysis pipeline. Author Chowdhury, Koushik deposited this de-identified data on Harvard Dataverse, with updates noted as of May 2026.

Use Cases

• Reproducing computational analyses based on the described PDCD1/CD2 analysis pipeline
• Benchmarking new single-cell analysis methods against the provided processed AnnData objects and model outputs
• Investigating immune cell phenotypes in TNBC based on the included immune phenotype scores

Strengths

• Data is derived from a publicly available, authoritative source (NCBI GEO GSE176078)
• Contains processed outputs from a specific, documented analysis pipeline (TNBC PDCD1/CD2)
• Includes multiple analysis artifact types: AnnData objects, model outputs, and immune phenotype scores

Limitations

• Description metadata is limited; actual data quality requires manual inspection after download
• Column-level documentation is absent; field semantics must be inferred after download
• Row count is unknown, which may limit suitability assessment

Provenance

Source

NCBI GEO (GSE176078)

Collection Method

Processed from original single-cell RNA sequencing data using a custom computational pipeline

Time Range

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Freshness

Last updated 2026-05-04 23:58:10; freshness should be verified

Geography

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