Abbreviations List: tRNA Modification Mass Chromatograms and Sequencing Data

An abbreviations list accompanies supplementary figures and tables from a study of tRNA modifications. The associated data includes mass chromatograms detecting tRNA modifications in replicates of Trypanosoma cruzi, HEK293 cells, HCT116 cells, and E. coli, as well as tRNA-seq results from T. cruzi life forms. The dataset was authored by Herbert Guimaraes de Sousa Silva and last updated in May 2026.

Use Cases

• Cross-referencing abbreviations used in mass spectrometry data for tRNA modifications
• Analyzing tRNA modification patterns based on mass-to-charge ratios listed in supplementary tables
• Comparing tRNA-seq data quality and termination signatures between biological replicates
• Validating CRISPR-Cas9 knockout and add-back cell line generation for the Tyw1a gene

Strengths

• Data is associated with multiple biological replicates (e.g., EPI R1 and R2) for validation
• Includes data from multiple model systems (T. cruzi, HEK293, HCT116, E. coli) for comparative analysis
• Licensed under CC-BY-4.0 for open reuse

Limitations

• Dataset is very small (10.1 KB), indicating limited scope
• Row count and column-level documentation are unknown, requiring manual inspection after download
• Description metadata is limited; actual data quality requires manual inspection after download

Provenance

Source

figshare

Collection Method

Likely generated as supplementary material for a research publication, involving mass spectrometry and tRNA sequencing.

Freshness

Last updated 2026-05-26 17:40:47; freshness should be verified